STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
linC-12,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by similarity to SP:P50197; match to protein family HMM PF00106. (253 aa)    
Predicted Functional Partners:
lcdH
3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.846
SPO1435
Identified by match to protein family HMM PF05853.
  
    0.546
glpR
Glycerol-3-phosphate regulon repressor; Identified by similarity to SP:P09392; match to protein family HMM PF00455.
 
  
 0.479
SPO3593
Identified by match to protein family HMM PF00884.
  
 
 0.455
SPO3030
Efflux ABC transporter, transmembrane ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 0.418
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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