STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1439DNA binding protein, putative; Identified by match to protein family HMM PF01381. (283 aa)    
Predicted Functional Partners:
SPO1441
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
 
     0.896
SPO1440
Hypothetical protein; Identified by similarity to PIR:E84256.
 
     0.895
SPO1438
Hypothetical protein; Identified by similarity to GB:BAC50099.1.
       0.773
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
 
     0.768
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
     0.589
dddP
DMSP lyase; Identified by match to protein family HMM PF00557.
 
     0.561
SPO1442
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
    0.560
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.518
SPO1657
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
     0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.