Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO1439DNA binding protein, putative; Identified by match to protein family HMM PF01381. (283 aa)    
Predicted Functional Partners:
SPO1441
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
 
     0.904
SPO1440
Hypothetical protein; Identified by similarity to PIR:E84256.
 
     0.894
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
 
     0.785
SPO1438
Hypothetical protein; Identified by similarity to GB:BAC50099.1.
       0.773
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
     0.589
dddP
DMSP lyase; Identified by match to protein family HMM PF00557.
 
     0.560
SPO1442
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
     0.557
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.518
SPO1657
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
     0.435
SPO1628
Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
  
  
 0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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