STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1447Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796. (431 aa)    
Predicted Functional Partners:
SPO1448
Hypothetical protein; Identified by similarity to GB:BAC48694.1.
 
 
 0.988
SPO1445
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
 
 
 0.961
SPO1449
Identified by match to protein family HMM PF00501.
 
 
 0.958
SPO1450
Aromatic 1,2-dioxygenase, beta subunit; Identified by match to protein family HMM PF00866.
 
    0.952
SPO1451
Aromatic 1,2-dioxygenase, alpha subunit; Identified by match to protein family HMM PF00355; match to protein family HMM PF00848.
 
    0.943
SPO1446
Cyclase, putative; Identified by match to protein family HMM PF04199.
 
     0.941
SPO1452
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 
   
 0.845
SPO1013
Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.839
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.821
bktB
Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.800
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.