Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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SPO1454TRAP dicarboxylate transporter, DctP subunit; Identified by match to protein family HMM PF03480. (355 aa)    
Predicted Functional Partners:
SPO1455
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
  
 0.927
SPO1456
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.909
SPO0737
TRAP dicarboxylate transporter family protein, DctQ subunit.
 
  
 0.823
SPO0736
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.789
SPO1453
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
     0.718
SPO1450
Aromatic 1,2-dioxygenase, beta subunit; Identified by match to protein family HMM PF00866.
 
     0.497
SPO1449
Identified by match to protein family HMM PF00501.
 
     0.489
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
  
   
 0.450
SPO1816
TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
 
  
 0.450
SPO0265
Auxin efflux carrier family protein; Identified by similarity to GB:AAA99820.1; match to protein family HMM PF03547.
 
     0.439
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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