Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SPO1459Indolepyruvate oxidoreductase, IorA subunit, putative; Identified by similarity to SP:O07835; match to protein family HMM PF02775. (715 aa)    
Predicted Functional Partners:
SPO1460
Indolepyruvate oxidoreductase, IorB subunit, putative.
 
 
 0.974
SPO1458
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
     0.932
SPO1446
Cyclase, putative; Identified by match to protein family HMM PF04199.
 
     0.767
SPO1457
Identified by match to protein family HMM PF03061.
 
     0.740
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
 
   
 0.725
SPO1450
Aromatic 1,2-dioxygenase, beta subunit; Identified by match to protein family HMM PF00866.
 
     0.673
SPO1448
Hypothetical protein; Identified by similarity to GB:BAC48694.1.
 
   
 0.669
SPO1461
Hypothetical protein; Identified by similarity to GB:BAC48692.1.
 
     0.644
SPO1451
Aromatic 1,2-dioxygenase, alpha subunit; Identified by match to protein family HMM PF00355; match to protein family HMM PF00848.
 
   
 0.634
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.608
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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