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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1464TRAP dicarboxylate transporter, DctQ subunit, putative. (167 aa)    
Predicted Functional Partners:
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
  
 0.941
SPO1463
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
     0.909
SPO1474
Tautomerase, putative; Belongs to the 4-oxalocrotonate tautomerase family.
 
     0.777
SPO1469
3-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890.
 
    0.769
SPO1471
Identified by match to protein family HMM PF00857.
 
     0.741
SPO1460
Indolepyruvate oxidoreductase, IorB subunit, putative.
 
     0.695
SPO1475
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.695
SPO1459
Indolepyruvate oxidoreductase, IorA subunit, putative; Identified by similarity to SP:O07835; match to protein family HMM PF02775.
 
     0.581
SPO1461
Hypothetical protein; Identified by similarity to GB:BAC48692.1.
 
     0.566
SPO1466
Opine dehydrogenase, putative; Identified by similarity to SP:Q44297; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
 
     0.560
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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