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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1466Opine dehydrogenase, putative; Identified by similarity to SP:Q44297; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (359 aa)    
Predicted Functional Partners:
SPO1467
Identified by match to protein family HMM PF00725; match to protein family HMM PF02737.
 
  
 0.885
SPO1461
Hypothetical protein; Identified by similarity to GB:BAC48692.1.
 
     0.750
SPO1069
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.673
engA
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.673
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.662
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
 
    0.636
SPO1450
Aromatic 1,2-dioxygenase, beta subunit; Identified by match to protein family HMM PF00866.
  
     0.612
SPO1448
Hypothetical protein; Identified by similarity to GB:BAC48694.1.
  
   
 0.606
SPO1451
Aromatic 1,2-dioxygenase, alpha subunit; Identified by match to protein family HMM PF00355; match to protein family HMM PF00848.
  
     0.590
SPO1464
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
     0.560
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.