Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1470Isocitrate lyase family protein; Identified by similarity to SP:Q56062. (287 aa)    
Predicted Functional Partners:
SPO1471
Identified by match to protein family HMM PF00857.
 
    0.938
gltA
Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
 
 0.928
SPO1469
3-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890.
 
  
 0.923
SPO1474
Tautomerase, putative; Belongs to the 4-oxalocrotonate tautomerase family.
 
     0.912
SPO1473
Hydantoin utilization protein B, putative; Identified by similarity to SP:Q01263; match to protein family HMM PF02538.
 
     0.840
hyuA
Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.
 
     0.819
SPO1475
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.683
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.656
SPO1085
Hypothetical protein; Identified by similarity to GB:CAE29266.1.
  
     0.619
SPO1468
Identified by match to protein family HMM PF00155.
       0.618
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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