STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1475Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (259 aa)    
Predicted Functional Partners:
SPO1469
3-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890.
 
    0.880
SPO1471
Identified by match to protein family HMM PF00857.
 
     0.861
SPO1474
Tautomerase, putative; Belongs to the 4-oxalocrotonate tautomerase family.
 
     0.847
SPO1473
Hydantoin utilization protein B, putative; Identified by similarity to SP:Q01263; match to protein family HMM PF02538.
 
     0.727
SPO1464
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
     0.696
hyuA
Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.
 
     0.689
leuD-2
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
     0.688
SPO1470
Isocitrate lyase family protein; Identified by similarity to SP:Q56062.
 
     0.683
leuC-2
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.648
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.600
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.