STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1480Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (241 aa)    
Predicted Functional Partners:
SPO1481
Hypothetical protein; Identified by similarity to GB:AAQ64061.1.
 
  
 0.965
SPO1486
Hypothetical protein; Identified by similarity to GB:AAN56374.1.
 
  
 0.952
SPO1485
Sodium:galactoside symporter family protein; Identified by similarity to SP:P96792.
 
  
 0.928
SPO1482
Hypothetical protein; Identified by similarity to PIR:F97597.
 
   
 0.920
SPO1479
Transcriptional activator, putative; Identified by similarity to SP:P40685.
 
   
 0.802
SPO1483
Cyclopropane-fatty-acyl-phospholipid synthase, putative; Identified by similarity to SP:P30010; match to protein family HMM PF02353.
 
   
 0.791
SPO1484
Hypothetical protein; Identified by similarity to GB:AAO56021.1.
 
     0.741
SPO3654
7-alpha-hydroxysteroid dehydrogenase, putative; Identified by similarity to SP:P25529; match to protein family HMM PF00106.
  
 
 0.677
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.
 
   
 0.606
SPO1478
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.551
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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