Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO14942-hydroxychromene-2-carboxylate isomerase, putative; This may represent a duplication of NahD in which the N-terminus copy has diverged more from NahD than the C-terminus copy; identified by match to protein family HMM PF01323. (454 aa)    
Predicted Functional Partners:
SPO0424
Identified by match to protein family HMM PF07690.
  
     0.608
SPO3651
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
  
     0.558
SPO0385
2-hydroxychromene-2-carboxylate isomerase, putative; Identified by match to protein family HMM PF01323.
  
     0.486
SPO2911
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
     0.459
SPO1491
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.450
SPO1492
Branched-chain amino acid ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.450
SPO1493
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
       0.450
SPO1490
Regulatory protein, putative; Identified by similarity to GB:BAA11039.1.
       0.442
SPO1495
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.426
SPO1496
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
       0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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