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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1495ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (235 aa)    
Predicted Functional Partners:
SPO1496
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.998
SPO1497
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
 
 0.979
SPO3729
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 
 0.805
lolE
Lipoprotein releasing system transmembrane protein LolE; Identified by similarity to SP:P75956; match to protein family HMM PF02687.
 
 
 0.791
SPO1546
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005.
 
     
0.779
SPO2182
Permease, putative; Identified by match to protein family HMM PF02687.
  
 
 0.760
SPO0703
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.720
SPO3415
Outer membrane lipoprotein carrier protein LolA, putative; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.689
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
 
   
 0.550
SPO2714
Peptidase, M50 family; Identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163.
 
 
 0.501
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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