Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1508Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011. (606 aa)    
Predicted Functional Partners:
SPO3850
Glutathione-dependent formaldehyde dehydrogenase; Identified by similarity to SP:P45382; match to protein family HMM PF00107; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.938
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
 
 0.930
SPO0097
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 
 0.908
SPO3368
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 
 0.908
SPO3382
Identified by match to protein family HMM PF00171.
   
 
 0.908
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
 
  
 0.870
SPO1514
Hypothetical protein; Identified by similarity to PIR:B95864.
 
    0.850
SPO1516
Amino acid ABC transporter, periplasmic substrate-binding protein, putative.
 
  
 0.841
SPO1506
GfdT protein; Identified by similarity to GB:AAL30776.1.
 
    0.839
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
     0.829
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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