STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1509Identified by match to protein family HMM PF00034. (135 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.879
petC
Ubiquinol--cytochrome c reductase, cytochrome c1; Identified by similarity to SP:Q02760; match to protein family HMM PF02167.
 
 0.858
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
 
 
 0.838
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
   
 0.836
ompW
Outer membrane protein OmpW; Identified by similarity to SP:P17266; match to protein family HMM PF03922.
   
    0.823
SPO1516
Amino acid ABC transporter, periplasmic substrate-binding protein, putative.
 
    0.775
SPO1514
Hypothetical protein; Identified by similarity to PIR:B95864.
 
     0.748
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
 
    0.739
soxE
Diheme cytochrome c SoxE; Identified by match to protein family HMM PF00034.
 
   
 0.693
SPO1512
Hypothetical protein; Identified by similarity to PIR:D95864.
 
     0.660
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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