Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1513Hypothetical protein; Identified by similarity to GB:AAM77056.1. (318 aa)    
Predicted Functional Partners:
SPO1514
Hypothetical protein; Identified by similarity to PIR:B95864.
 
  
 0.960
SPO1512
Hypothetical protein; Identified by similarity to PIR:D95864.
 
    0.958
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
  
 0.956
SPO1511
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.955
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
 
 0.936
SPO1521
Regulatory protein, putative; Identified by similarity to SP:Q00790.
 
  
 0.919
SPO1516
Amino acid ABC transporter, periplasmic substrate-binding protein, putative.
 
    0.908
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
  
 0.870
pqqE
Coenzyme PQQ synthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
 
  
 0.784
SPO1509
Identified by match to protein family HMM PF00034.
 
    0.739
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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