Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1514Hypothetical protein; Identified by similarity to PIR:B95864. (393 aa)    
Predicted Functional Partners:
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
 
  
 0.960
SPO1511
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.951
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
     0.945
SPO1512
Hypothetical protein; Identified by similarity to PIR:D95864.
 
  
 0.941
SPO1516
Amino acid ABC transporter, periplasmic substrate-binding protein, putative.
 
  
 0.892
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
     0.891
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
    0.850
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.781
SPO1492
Branched-chain amino acid ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.761
SPO1509
Identified by match to protein family HMM PF00034.
 
     0.748
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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