STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1521Regulatory protein, putative; Identified by similarity to SP:Q00790. (689 aa)    
Predicted Functional Partners:
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
 
  
 0.913
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
  
 0.876
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
    0.806
SPO1516
Amino acid ABC transporter, periplasmic substrate-binding protein, putative.
 
    0.787
SPO1511
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.768
SPO1514
Hypothetical protein; Identified by similarity to PIR:B95864.
 
  
 0.741
SPO1512
Hypothetical protein; Identified by similarity to PIR:D95864.
 
     0.689
soxE
Diheme cytochrome c SoxE; Identified by match to protein family HMM PF00034.
 
  
 0.685
SPO1505
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.658
SPO1509
Identified by match to protein family HMM PF00034.
 
  
 0.639
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (22%) [HD]