STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1523Identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409. (318 aa)    
Predicted Functional Partners:
SPO1524
Hypothetical protein; Identified by similarity to GB:AAN68285.1.
 
     0.949
SPO1522
Hypothetical protein; Identified by similarity to GB:BAC51459.1.
 
 
 0.819
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
 
   
 0.729
SPO1513
Hypothetical protein; Identified by similarity to GB:AAM77056.1.
 
     0.597
SPO1526
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.573
SPO1525
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.565
SPO1514
Hypothetical protein; Identified by similarity to PIR:B95864.
 
     0.561
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
 
   
 0.524
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
     0.523
pqqC
Coenzyme PQQ synthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
     0.478
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.