STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1529Hypothetical protein; Identified by similarity to GB:BAC14468.1. (237 aa)    
Predicted Functional Partners:
SPO1530
Integral membrane protein MviN.
 
     0.852
SPO1528
Hypothetical protein; Identified by similarity to GB:AAQ00309.1.
       0.793
SPO1527
Hypothetical protein; Identified by similarity to GB:CAF18626.1.
       0.780
SPO1537
Twin-arginine translocation pathway signal sequence domain protein, putative; Identified by match to protein family HMM TIGR01409.
  
     0.726
SPO1539
O-antigen polymerase, putative; Identified by match to protein family HMM PF04932.
  
     0.716
SPO1538
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
     0.695
SPO1526
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.536
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.530
SPO1535
Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.
 
     0.529
SPO1525
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.517
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.