Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1530Integral membrane protein MviN. (509 aa)    
Predicted Functional Partners:
SPO1529
Hypothetical protein; Identified by similarity to GB:BAC14468.1.
 
     0.852
SPO1539
O-antigen polymerase, putative; Identified by match to protein family HMM PF04932.
 
  
 0.713
SPO1537
Twin-arginine translocation pathway signal sequence domain protein, putative; Identified by match to protein family HMM TIGR01409.
  
     0.682
SPO1538
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
   
 0.663
SPO1535
Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.
 
   
 0.593
SPO1531
Hypothetical protein; Identified by similarity to GB:BAC73064.1.
       0.570
SPO1527
Hypothetical protein; Identified by similarity to GB:CAF18626.1.
       0.465
SPO1528
Hypothetical protein; Identified by similarity to GB:AAQ00309.1.
       0.465
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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