STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1533Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (380 aa)    
Predicted Functional Partners:
SPO1534
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.868
SPO1539
O-antigen polymerase, putative; Identified by match to protein family HMM PF04932.
 
  
 0.773
SPO1538
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.715
SPO1537
Twin-arginine translocation pathway signal sequence domain protein, putative; Identified by match to protein family HMM TIGR01409.
 
     0.708
SPO0838
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.679
SPO1532
Hypothetical protein; Identified by Glimmer2; putative.
       0.678
SPO0556
UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.664
SPO1535
Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.
 
  
 0.636
SPO0854
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.635
SPO1536
Glycosyltransferase, group 1; Identified by match to protein family HMM PF00534.
 
    
0.621
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.