STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1538Chain length determinant protein; Identified by match to protein family HMM PF02706. (589 aa)    
Predicted Functional Partners:
SPO1539
O-antigen polymerase, putative; Identified by match to protein family HMM PF04932.
 
  
 0.959
SPO1537
Twin-arginine translocation pathway signal sequence domain protein, putative; Identified by match to protein family HMM TIGR01409.
 
     0.946
SPO1535
Polysaccharide deacetylase domain protein; Identified by match to protein family HMM PF01522.
 
   
 0.943
SPO1540
Glycosyl transferase, group 2; Identified by match to protein family HMM PF00535.
 
  
 0.921
SPO1536
Glycosyltransferase, group 1; Identified by match to protein family HMM PF00534.
 
  
 0.920
SPO1534
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.900
SPO1756
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
  
 
 0.866
SPO1533
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.716
SPO1529
Hypothetical protein; Identified by similarity to GB:BAC14468.1.
  
     0.695
SPO1530
Integral membrane protein MviN.
 
   
 0.663
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.