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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1546Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005. (284 aa)    
Predicted Functional Partners:
SPO1545
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
  
 0.996
naaB-2
N-acetyltaurine ABC transporter, permease protein; Identified by similarity to SP:P42063; PMID: 21757489.
  
 0.972
SPO1212
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
  
 0.970
SPO1544
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.
 
 0.963
SPO0099
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.961
SPO1543
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.
 
  
 0.953
SPO2816
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
  
 0.953
SPO1645
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
  
 0.947
SPO2833
Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.925
SPO2672
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     
0.895
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.