SPO1547 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1547

Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (254 aa)

Predicted Functional Partners:

SPO1545

0.994

SPO1544

0.956

SPO1543

0.953

SPO0099

0.947

SPO2833

0.940

SPO1212

0.938

SPO1645

0.927

SPO3776

0.922

naaB-2

0.916

SPO2816

0.901

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0099	SPO1543	SPO0099	SPO1543	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	0.424
SPO0099	SPO1544	SPO0099	SPO1544	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.764
SPO0099	SPO1547	SPO0099	SPO1547	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.947
SPO1212	SPO1544	SPO1212	SPO1544	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.804
SPO1212	SPO1547	SPO1212	SPO1547	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.938
SPO1543	SPO0099	SPO1543	SPO0099	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.424
SPO1543	SPO1544	SPO1543	SPO1544	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.964
SPO1543	SPO1545	SPO1543	SPO1545	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.962
SPO1543	SPO1547	SPO1543	SPO1547	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.953
SPO1544	SPO0099	SPO1544	SPO0099	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.764
SPO1544	SPO1212	SPO1544	SPO1212	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	0.804
SPO1544	SPO1543	SPO1544	SPO1543	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	0.964
SPO1544	SPO1545	SPO1544	SPO1545	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.969
SPO1544	SPO1547	SPO1544	SPO1547	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.956
SPO1544	SPO1645	SPO1544	SPO1645	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.807
SPO1544	SPO2816	SPO1544	SPO2816	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	0.716
SPO1544	SPO2833	SPO1544	SPO2833	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.792
SPO1544	SPO3776	SPO1544	SPO3776	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.573
SPO1544	naaB-2	SPO1544	SPO0662	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	N-acetyltaurine ABC transporter, permease protein; Identified by similarity to SP:P42063; PMID: 21757489.	0.805
SPO1545	SPO1543	SPO1545	SPO1543	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	0.962

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About