STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
tmmTrimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986. (450 aa)    
Predicted Functional Partners:
SPO0167
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO0565
Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO1602
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO2108
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO2134
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
     
  0.900
SPO1552
ABC transporter, periplasmic substrate-binding protein, putative.
 
     0.804
SPO1580
Hypothetical protein; Identified by similarity to GB:BAB53453.1.
 
   
 0.804
SPO1582
Hypothetical protein; Identified by similarity to GB:BAB53455.1.
 
   
 0.803
SPO1562
Glycine cleavage system T protein, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
    0.792
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.