STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1552ABC transporter, periplasmic substrate-binding protein, putative. (444 aa)    
Predicted Functional Partners:
SPO1830
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.
  
  
  0.912
SPO0825
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
     
  0.900
SPO1021
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
   
 
  0.900
SPO1846
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
     
  0.900
SPO1939
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
     
  0.900
SPO2534
Assignment partly based on membership in an branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409.
     
  0.900
SPO3291
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.
     
  0.900
SPO3705
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; Identified by similarity to GB:AAP25826.1; match to protein family HMM PF01094.
     
  0.900
tmm
Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986.
 
     0.804
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.781
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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