STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1554Identified by match to protein family HMM PF00909. (571 aa)    
Predicted Functional Partners:
SPO1553
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.849
glnB-1
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.
 
 
 0.787
glnB-2
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.
 
 
 0.783
SPO1552
ABC transporter, periplasmic substrate-binding protein, putative.
 
   
 0.769
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
  
  
 0.663
SPO1563
Identified by match to protein family HMM PF01152.
  
     0.662
SPO1567
Aminotransferase, putative.
 
    0.657
SPO1580
Hypothetical protein; Identified by similarity to GB:BAB53453.1.
  
     0.621
SPO1562
Glycine cleavage system T protein, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
   
 0.602
SPO1556
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.589
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.