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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1563Identified by match to protein family HMM PF01152. (150 aa)    
Predicted Functional Partners:
SPO1562
Glycine cleavage system T protein, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
     0.784
SPO1581
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 
     0.727
SPO1580
Hypothetical protein; Identified by similarity to GB:BAB53453.1.
  
     0.678
SPO1554
Identified by match to protein family HMM PF00909.
  
     0.662
SPO1561
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
 
   0.647
SPO1567
Aminotransferase, putative.
  
     0.626
SPO1552
ABC transporter, periplasmic substrate-binding protein, putative.
  
     0.604
SPO1579
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
  
     0.534
SPO1582
Hypothetical protein; Identified by similarity to GB:BAB53455.1.
  
     0.528
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
  
     0.518
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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