STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1580Hypothetical protein; Identified by similarity to GB:BAB53453.1. (213 aa)    
Predicted Functional Partners:
SPO1581
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 
   
 0.969
SPO1582
Hypothetical protein; Identified by similarity to GB:BAB53455.1.
 
   
 0.963
SPO1579
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
   
 0.945
SPO1562
Glycine cleavage system T protein, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
  
  0.903
tmm
Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986.
 
   
 0.804
SPO1552
ABC transporter, periplasmic substrate-binding protein, putative.
  
     0.746
SPO1561
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
     0.702
SPO1578
Identified by match to protein family HMM PF00909.
 
     0.698
SPO1563
Identified by match to protein family HMM PF01152.
  
     0.678
glnT
Glutamine synthetase III; Identified by similarity to SP:P31592; match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.
 
   
 0.629
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.