STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1582Hypothetical protein; Identified by similarity to GB:BAB53455.1. (355 aa)    
Predicted Functional Partners:
SPO1579
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
   
 0.969
SPO1580
Hypothetical protein; Identified by similarity to GB:BAB53453.1.
 
   
 0.963
SPO1581
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 
   
 0.963
SPO1562
Glycine cleavage system T protein, putative; Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
  
  0.892
tmm
Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986.
 
   
 0.803
SPO1576
Glutamine amidotransferase, class II; Identified by match to protein family HMM PF00310.
 
     0.741
SPO1575
Identified by match to protein family HMM PF01493.
 
     0.709
SPO1574
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
 
     0.696
SPO1552
ABC transporter, periplasmic substrate-binding protein, putative.
  
     0.666
SPO1578
Identified by match to protein family HMM PF00909.
 
     0.661
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.