STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1583DNA-binding protein, putative; Identified by match to protein family HMM PF01381. (217 aa)    
Predicted Functional Partners:
SPO1575
Identified by match to protein family HMM PF01493.
 
     0.815
SPO1576
Glutamine amidotransferase, class II; Identified by match to protein family HMM PF00310.
 
     0.815
SPO1574
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
 
     0.786
glnT
Glutamine synthetase III; Identified by similarity to SP:P31592; match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.
 
  
 0.742
SPO1584
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
    0.614
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
 
     0.458
SPO1582
Hypothetical protein; Identified by similarity to GB:BAB53455.1.
 
     0.424
SPO1586
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
   
 0.403
SPO1587
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
 
     0.401
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
     
 0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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