STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1589Identified by match to protein family HMM PF02627. (127 aa)    
Predicted Functional Partners:
SPO2768
4-carboxymuconolactone decarboxylase, putative; Identified by match to protein family HMM PF02627.
    
  0.903
SPO2710
Identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561.
   
 0.862
SPO1590
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
 
   
 0.691
SPO1591
SIS domain protein; Identified by match to protein family HMM PF01380.
       0.596
SPO2707
Identified by match to protein family HMM PF00296.
 
   
 0.562
SPO1588
Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM TIGR01373.
  
    0.524
SPO1586
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
       0.504
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
  
    0.496
SPO2712
Hypothetical protein; Identified by similarity to PIR:C95315; match to protein family HMM PF06684.
 
     0.494
SPO1587
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
       0.493
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.