Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1591SIS domain protein; Identified by match to protein family HMM PF01380. (295 aa)    
Predicted Functional Partners:
SPO1590
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
 
     0.937
SPO1595
Mandelate racemase/muconate lactonizing enzyme; Identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746.
 
     0.880
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.847
SPO1592
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
     0.843
SPO1594
Mandelate racemase/muconate lactonizing enzyme, putative; Identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.811
SPO1593
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
     0.629
SPO1589
Identified by match to protein family HMM PF02627.
       0.596
dddQ
DMSP lyase; May act as a dimethlysulfonioproprionate (DMSP) in vitro, releasing dimethyl sulfide (DMS). DMS is the principal form by which sulfur is transported from oceans to the atmosphere. The real activity of the protein is however subject to debate and it is unclear whether it constitutes a real dimethlysulfonioproprionate lyase in vivo (Probable).
     
 0.535
catB
Muconate cycloisomerase I; Identified by similarity to PIR:T48870; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.509
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
  
 0.501
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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