STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1593Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107. (354 aa)    
Predicted Functional Partners:
SPO1594
Mandelate racemase/muconate lactonizing enzyme, putative; Identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.821
SPO1595
Mandelate racemase/muconate lactonizing enzyme; Identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746.
 
     0.815
dddQ
DMSP lyase; May act as a dimethlysulfonioproprionate (DMSP) in vitro, releasing dimethyl sulfide (DMS). DMS is the principal form by which sulfur is transported from oceans to the atmosphere. The real activity of the protein is however subject to debate and it is unclear whether it constitutes a real dimethlysulfonioproprionate lyase in vivo (Probable).
  
  
 0.793
SPO1592
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
   
 0.786
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.784
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.653
SPO1591
SIS domain protein; Identified by match to protein family HMM PF01380.
 
     0.629
SPO1590
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
       0.530
SPO1589
Identified by match to protein family HMM PF02627.
     
 0.424
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.