Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1595Mandelate racemase/muconate lactonizing enzyme; Identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746. (367 aa)    
Predicted Functional Partners:
SPO1594
Mandelate racemase/muconate lactonizing enzyme, putative; Identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.980
SPO0607
Proline racemase, putative; Identified by similarity to GB:CAB71312.1; Belongs to the proline racemase family.
    
 0.907
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.904
SPO0606
Hypothetical protein; Identified by similarity to PIR:C95874.
    
  0.901
SPO1592
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
   
 0.898
SPO1590
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
 
  
 0.886
SPO1591
SIS domain protein; Identified by match to protein family HMM PF01380.
 
     0.880
SPO1593
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
     0.815
dddQ
DMSP lyase; May act as a dimethlysulfonioproprionate (DMSP) in vitro, releasing dimethyl sulfide (DMS). DMS is the principal form by which sulfur is transported from oceans to the atmosphere. The real activity of the protein is however subject to debate and it is unclear whether it constitutes a real dimethlysulfonioproprionate lyase in vivo (Probable).
       0.773
SPO1589
Identified by match to protein family HMM PF02627.
  
  
 0.469
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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