STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO1611Membrane protein, putative; Identified by similarity to GB:CAE10095.1. (409 aa)    
Predicted Functional Partners:
SPO1613
Hypothetical protein; Identified by similarity to SP:Q9CKX3.
 
     0.855
SPO1612
Twin-arginine translocation pathway signal sequence domain protein; Identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409.
 
     0.781
SPO1614
Hypothetical protein; Identified by similarity to GB:AAM72242.1.
 
     0.668
SPO0636
EF hand domain protein.
  
     0.627
SPO1610
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
       0.574
SPO0285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.532
SPO1521
Regulatory protein, putative; Identified by similarity to SP:Q00790.
  
     0.412
SPO1607
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
       0.411
potB
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
       0.411
potA
Spermidine/putrescine ABC transporter, ATP-binding component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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