STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1613Hypothetical protein; Identified by similarity to SP:Q9CKX3. (124 aa)    
Predicted Functional Partners:
SPO1612
Twin-arginine translocation pathway signal sequence domain protein; Identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409.
 
     0.943
SPO1614
Hypothetical protein; Identified by similarity to GB:AAM72242.1.
 
     0.867
SPO1611
Membrane protein, putative; Identified by similarity to GB:CAE10095.1.
 
     0.855
SPO1610
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
       0.469
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
     0.439
SPO2521
Lipoprotein, putative.
  
     0.416
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.