Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1617Type I secretion target repeat protein; Identified by match to protein family HMM PF00353. (1003 aa)    
Predicted Functional Partners:
SPO1618
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO1619
Hypothetical protein; Identified by similarity to GB:CAE07324.1.
       0.773
SPO1994
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.750
SPO3729
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.724
SPO3728
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.
 
 
 0.704
SPO1995
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 0.636
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
 
  
0.584
SPO0459
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.432
SPO1263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.421
SPO2586
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 
0.414
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.