Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1626Type I secretion target repeat protein; Identified by match to protein family HMM PF00353. (1271 aa)    
Predicted Functional Partners:
SPO2716
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451.
 
 
 0.719
SPO1263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.709
SPO1349
Lipoprotein, putative.
 
   
 0.657
SPO0459
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.625
SPO2612
DNA-binding protein HU, putative.
 
  
 0.615
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.605
SPO1742
Hypothetical protein; Identified by similarity to GB:BAB54226.1.
 
    0.597
SPO3729
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.573
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.569
SPO1769
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.568
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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