SPO1644 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1644

Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (593 aa)

Predicted Functional Partners:

SPO1645

0.993

SPO2997

0.965

SPO1646

0.947

SPO1647

0.886

naaB-2

0.873

SPO0099

0.867

SPO2833

0.832

SPO3776

0.825

SPO1545

0.824

SPO2996

0.820

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0099	SPO1644	SPO0099	SPO1644	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.867
SPO0099	SPO1646	SPO0099	SPO1646	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.860
SPO0099	SPO1647	SPO0099	SPO1647	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.479
SPO0099	SPO2996	SPO0099	SPO2996	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.768
SPO1545	SPO1644	SPO1545	SPO1644	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.824
SPO1545	SPO1646	SPO1545	SPO1646	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.858
SPO1545	SPO1647	SPO1545	SPO1647	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.518
SPO1545	SPO2996	SPO1545	SPO2996	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.819
SPO1644	SPO0099	SPO1644	SPO0099	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.867
SPO1644	SPO1545	SPO1644	SPO1545	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.824
SPO1644	SPO1645	SPO1644	SPO1645	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.993
SPO1644	SPO1646	SPO1644	SPO1646	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.947
SPO1644	SPO1647	SPO1644	SPO1647	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.886
SPO1644	SPO2833	SPO1644	SPO2833	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.832
SPO1644	SPO2996	SPO1644	SPO2996	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.820
SPO1644	SPO2997	SPO1644	SPO2997	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.965
SPO1644	SPO3776	SPO1644	SPO3776	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.825
SPO1644	naaB-2	SPO1644	SPO0662	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	N-acetyltaurine ABC transporter, permease protein; Identified by similarity to SP:P42063; PMID: 21757489.	0.873
SPO1645	SPO1644	SPO1645	SPO1644	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.993
SPO1645	SPO1646	SPO1645	SPO1646	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.969

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About