STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1678Hypothetical protein; Identified by similarity to PIR:AE3305. (93 aa)    
Predicted Functional Partners:
SPO3457
Flagellin synthesis repressor protein FlbT, putative.
   
    0.971
SPO3458
Flagellar protein FlaF, putative.
   
    0.849
SPO3410
Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518.
   
  
 0.779
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.673
SPO3807
Hypothetical protein; Identified by similarity to GB:BAC45729.1.
  
     0.663
SPO1983
Hypothetical protein; Identified by similarity to PIR:AB3305.
  
    0.660
ctrA
DNA-binding response regulator CtrA; Identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
    0.653
SPO1742
Hypothetical protein; Identified by similarity to GB:BAB54226.1.
  
    0.634
fliG
Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706.
  
    0.626
SPO0541
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
    0.579
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.