STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1687Identified by similarity to SP:P52046; match to protein family HMM PF00378. (261 aa)    
Predicted Functional Partners:
SPO0758
Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.756
bhbD
3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041.
 
 0.752
SPO0298
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
 0.703
acdA-1
acyl-CoA dehydrogenase.
  
 0.703
acdA-2
acyl-CoA dehydrogenase.
  
 0.703
SPO0693
isobutyryl-CoA dehydrogenase; Identified by similarity to GB:AAL17673.1.
  
 0.703
SPO0774
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
 0.703
SPO0775
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
 0.703
SPO0879
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
 0.703
gcdH
glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
  
 0.703
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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