STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1696Identified by match to protein family HMM PF02538. (549 aa)    
Predicted Functional Partners:
hyuA
Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.
 0.999
SPO1695
Hydantoin utilization protein, putative; Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.
 0.999
SPO1473
Hydantoin utilization protein B, putative; Identified by similarity to SP:Q01263; match to protein family HMM PF02538.
  
  
 
0.922
SPO2806
Cytosine deaminase, putative; Identified by similarity to SP:P25524.
     
  0.900
SPO3739
Identified by match to protein family HMM PF01968; match to protein family HMM PF05378.
 
 
 0.819
SPO1698
Identified by match to protein family HMM PF01177.
      0.815
hisC-2
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.773
SPO1699
Identified by match to protein family HMM PF03972.
       0.732
SPO1700
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF02826.
       0.732
SPO1701
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
       0.716
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.