Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO1699Identified by match to protein family HMM PF03972. (448 aa)    
Predicted Functional Partners:
SPO1698
Identified by match to protein family HMM PF01177.
 
     0.838
SPO1700
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF02826.
 
     0.826
SPO1701
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
 
    0.800
SPO1695
Hydantoin utilization protein, putative; Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378.
       0.732
SPO1696
Identified by match to protein family HMM PF02538.
       0.732
hisC-2
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.732
gltA
Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
  
  
 0.651
SPO1598
Hypothetical protein; Identified by similarity to GB:CAE31122.1.
  
  
 0.527
SPO1085
Hypothetical protein; Identified by similarity to GB:CAE29266.1.
  
  
 0.456
SPO1470
Isocitrate lyase family protein; Identified by similarity to SP:Q56062.
  
  
 0.456
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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