STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1719TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786. (425 aa)    
Predicted Functional Partners:
SPO1721
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.953
SPO1720
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
 
 0.946
SPO2545
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
  
 0.802
dctP
TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
 
  
 0.786
SPO1722
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.684
SPO2628
TRAP transporter solute receptor, DctP family; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.654
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.577
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
  
  
 0.566
uehA
Ectoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family.
 
  
 0.545
uxuB
D-mannonate oxidoreductase; Identified by similarity to SP:P39160; match to protein family HMM PF01232; Belongs to the mannitol dehydrogenase family.
 
   
 0.541
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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