Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1725Hypothetical protein; Identified by similarity to GB:CAD15199.1. (247 aa)    
Predicted Functional Partners:
SPO3384
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
     0.722
SPO1727
Polyphosphate kinase 2, putative; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with UDP, but it can also use ADP, GDP and CDP.
       0.580
SPO3896
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.580
SPO1728
Esterase, putative; Identified by similarity to GB:AAC36352.1; match to protein family HMM PF00561.
  
    0.557
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.547
SPO0796
Hypothetical protein; Identified by similarity to GB:BAC72444.1.
 
  
 0.423
SPO0841
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
  
  
 0.423
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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