Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1727Polyphosphate kinase 2, putative; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with UDP, but it can also use ADP, GDP and CDP. (301 aa)    
Predicted Functional Partners:
SPO0224
Polyphosphate kinase, putative; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with GDP, but it can also use ADP, CDP and UDP.
  
  
 
0.909
ppk2
Polyphosphate kinase 2; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with ADP, but it can also use GDP, CDP and UDP.
  
  
0.906
SPO0941
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.831
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
  
    0.811
SPO3896
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.790
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
   
   0.764
SPO1728
Esterase, putative; Identified by similarity to GB:AAC36352.1; match to protein family HMM PF00561.
       0.742
SPO1725
Hypothetical protein; Identified by similarity to GB:CAD15199.1.
       0.580
SPO2237
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.546
ompW
Outer membrane protein OmpW; Identified by similarity to SP:P17266; match to protein family HMM PF03922.
   
    0.497
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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