Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1739Hypothetical protein; Identified by Glimmer2; putative. (195 aa)    
Predicted Functional Partners:
SPO2572
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.771
SPO2571
TRAP transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
  
     0.766
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.631
SPO1738
Dehalogenase, putative; Identified by similarity to GB:AAO60101.1; match to protein family HMM PF00037; match to protein family HMM PF03860.
       0.572
SPO0418
Membrane protein, putative; Identified by similarity to GB:CAE53834.1.
  
     0.513
SPO3540
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG032; identified in over 20 other Roseobacter strains'.
  
     0.487
SPO2968
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.475
SPO0393
Identified by match to protein family HMM PF01694.
  
     0.474
SPO1815
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
  
     0.468
SPO3229
Lipoprotein, putative.
  
     0.466
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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