Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1740Hypothetical protein; Identified by similarity to PIR:F97376. (191 aa)    
Predicted Functional Partners:
SPO3092
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
    0.982
SPO1742
Hypothetical protein; Identified by similarity to GB:BAB54226.1.
 
    0.974
SPO1741
Hypothetical protein; Identified by similarity to GB:CAE29115.1.
 
    0.968
SPO3091
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
  
 0.915
SPO3086
Identified by match to protein family HMM PF06981.
 
  
 0.851
SPO3085
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.840
SPO3089
ATPase, putative.
 
  
 0.806
SPO3095
Membrane protein, putative.
 
  
 0.768
SPO3094
Lipoprotein, putative.
 
  
 0.753
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
 
  
 0.748
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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