| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO0956 | rpoA | SPO0956 | SPO0511 | Hypothetical protein; Identified by similarity to PIR:AI3454. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.559 |
| SPO0956 | rpoB | SPO0956 | SPO3508 | Hypothetical protein; Identified by similarity to PIR:AI3454. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.762 |
| SPO0956 | rpoC | SPO0956 | SPO3507 | Hypothetical protein; Identified by similarity to PIR:AI3454. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.714 |
| SPO0956 | rpoD | SPO0956 | SPO1750 | Hypothetical protein; Identified by similarity to PIR:AI3454. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.810 |
| SPO0956 | rpoZ | SPO0956 | SPO3204 | Hypothetical protein; Identified by similarity to PIR:AI3454. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.559 |
| SPO1335 | rpoA | SPO1335 | SPO0511 | Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.827 |
| SPO1335 | rpoB | SPO1335 | SPO3508 | Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.795 |
| SPO1335 | rpoC | SPO1335 | SPO3507 | Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.531 |
| SPO1335 | rpoD | SPO1335 | SPO1750 | Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.840 |
| SPO1335 | rpoZ | SPO1335 | SPO3204 | Transcriptional regulator, Crp/Fnr family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.781 |
| SPO1420 | rpoA | SPO1420 | SPO0511 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.877 |
| SPO1420 | rpoB | SPO1420 | SPO3508 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.850 |
| SPO1420 | rpoC | SPO1420 | SPO3507 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| SPO1420 | rpoD | SPO1420 | SPO1750 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.765 |
| SPO1420 | rpoZ | SPO1420 | SPO3204 | Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.844 |
| SPO2059 | rpoA | SPO2059 | SPO0511 | Identified by match to protein family HMM PF02798. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.760 |
| SPO2059 | rpoB | SPO2059 | SPO3508 | Identified by match to protein family HMM PF02798. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.761 |
| SPO2059 | rpoD | SPO2059 | SPO1750 | Identified by match to protein family HMM PF02798. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.764 |
| SPO2059 | rpoZ | SPO2059 | SPO3204 | Identified by match to protein family HMM PF02798. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.763 |
| dnaG | nusA | SPO1749 | SPO0063 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.568 |
